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library(Spectre)
packageVersion('Spectre') 
## [1] '0.4.0'
summary(cars)
##      speed           dist
##  Min.   : 4.0   Min.   :  2.00
##  1st Qu.:12.0   1st Qu.: 26.00
##  Median :15.0   Median : 36.00
##  Mean   :15.4   Mean   : 42.98
##  3rd Qu.:19.0   3rd Qu.: 56.00
##  Max.   :25.0   Max.   :120.00
dat <- demo.clustered
dat
##                  FileName      NK11        CD3     CD45       Ly6G    CD11b
##      1:   CNS_Mock_01.csv   42.3719  40.098700  6885.08  -344.7830 14787.30
##      2:   CNS_Mock_01.csv   42.9586 119.014000  1780.29  -429.6650  5665.73
##      3:   CNS_Mock_01.csv   59.2366 206.238000 10248.30 -1603.8400 19894.30
##      4:   CNS_Mock_01.csv  364.9480  -0.233878  3740.04  -815.9800  9509.43
##      5:   CNS_Mock_01.csv  440.2470  40.035200  9191.38    40.5055  5745.82
##     ---
## 169000: CNS_WNV_D7_06.csv  910.8890  72.856100 31466.20  -316.5570 28467.80
## 169001: CNS_WNV_D7_06.csv  -10.2642  64.188700 45188.00  -540.5140 22734.00
## 169002: CNS_WNV_D7_06.csv -184.2910  -9.445650 11842.60   -97.9383 17237.00
## 169003: CNS_WNV_D7_06.csv  248.3860 229.986000 32288.20  -681.1630 19255.80
## 169004: CNS_WNV_D7_06.csv  738.9810  95.470300 46185.10 -1004.6000 22957.80
##              B220      CD8a       Ly6C       CD4  NK11_asinh    CD3_asinh
##      1:  -40.2399   83.7175   958.7000  711.0720  0.04235923  0.040087962
##      2:   86.6673   34.7219   448.2590  307.2720  0.04294540  0.118734817
##      3:  427.8310  285.8800  1008.8300  707.0940  0.05920201  0.204803270
##      4:  182.4200  333.6050   440.0710  249.7840  0.35729716 -0.000233878
##      5: -211.6940  149.2200    87.4815  867.5700  0.42713953  0.040024513
##     ---
## 169000:   -7.7972 -271.8040 12023.7000 1103.0500  0.81693878  0.072791800
## 169001:  202.4110 -936.4920  4188.3300  315.9400 -0.01026402  0.064144703
## 169002:  123.4760 -219.9320  8923.4000 -453.4640 -0.18326344 -0.009445510
## 169003: -656.0540 -201.5880 10365.7000   61.6765  0.24590035  0.228005328
## 169004: -661.6280   72.3356  9704.4700  -31.8532  0.68430866  0.095325863
##         CD45_asinh  Ly6G_asinh CD11b_asinh   B220_asinh  CD8a_asinh Ly6C_asinh
##      1:   2.627736 -0.33829345    3.388057 -0.040229048  0.08362002  0.8518665
##      2:   1.340828 -0.41743573    2.435282  0.086559169  0.03471493  0.4344615
##      3:   3.022631 -1.25101677    3.684212  0.415750122  0.28212257  0.8876036
##      4:   2.029655 -0.74509796    2.948184  0.181423123  0.32770787  0.4269784
##      5:   2.914359  0.04049443    2.449108 -0.210143906  0.14867171  0.0873703
##     ---
## 169000:   4.142314 -0.31149515    4.042229 -0.007797121 -0.26856390  3.1817517
## 169001:   4.504101 -0.51715205    3.817492  0.201053740 -0.83574631  2.1394053
## 169002:   3.166628 -0.09778240    3.541046  0.123164374 -0.21819650  2.8849492
## 169003:   4.168089 -0.63716643    3.651633 -0.616293228 -0.20024703  3.0339681
## 169004:   4.525922 -0.88462254    3.827279 -0.620947819  0.07227267  2.9683779
##           CD4_asinh     Sample Group Batch FlowSOM_cluster FlowSOM_metacluster
##      1:  0.66171351 01_Mock_01  Mock     A              23                   2
##      2:  0.30263135 01_Mock_01  Mock     A              55                   2
##      3:  0.65846851 01_Mock_01  Mock     A              64                   2
##      4:  0.24725691 01_Mock_01  Mock     A              53                   2
##      5:  0.78456678 01_Mock_01  Mock     A             110                   4
##     ---
## 169000:  0.95239703  12_WNV_06   WNV     A              72                   3
## 169001:  0.31090687  12_WNV_06   WNV     A              46                   3
## 169002: -0.43920651  12_WNV_06   WNV     A             133                   3
## 169003:  0.06163746  12_WNV_06   WNV     A             133                   3
## 169004: -0.03184782  12_WNV_06   WNV     A             103                   3
##                Population     UMAP_X    UMAP_Y
##      1:         Microglia -2.3603757  6.201213
##      2:         Microglia  2.7505242  7.119595
##      3:         Microglia -2.9486033  4.012670
##      4:         Microglia  0.6482904  6.481466
##      5:          NK cells -2.3941295  6.975885
##     ---
## 169000: Infil Macrophages -2.9640724 -5.058265
## 169001: Infil Macrophages -1.2644785 -3.555824
## 169002: Infil Macrophages -2.3592682 -2.429467
## 169003: Infil Macrophages -1.9531062 -4.049705
## 169004: Infil Macrophages -0.7404098 -4.686928
## Loading required package: ggplot2
## Loading required package: scales
## Loading required package: colorRamps
## Loading required package: ggthemes
## Loading required package: RColorBrewer
## Non-numeric values detected in col.axis -- using col.type = 'factor'

## Loading required package: ggpointdensity