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Spectre Protocols - Single-Cell Genomics

Spectre can be used for the analysis of single-cell genomics data, in addition to cytometry and imaging data. Spectre v2 (not yet publically released) will feature significant improvements in the analysis of single-cell genomics data, but in the meantime we have provided some helpful tutorials for using Spectre v1 with single-cell genomic data.


Analysing scRNAseq data with cytometry tools
Analysing CITE-seq data using Spectre
Integrating cytometry and single-cell multiomics data
A short tutorial on using cytometry-based clustering tools with scRNAseq data. A short tutorial on analysing CITE-seq data using Spectre. A short tutorial on integrating cytometry and single-cell data together.