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Getting started with spatial analysis using SpectreMAP

To use SpectreMAP, you will also need to install R, RStudio, and Spectre – please see this page for installation instructions.

SpectreMAP (for spatial analysis only)

Install SpectreMAP (if performing spatial analysis)

If you intend to perform spatial analysis of Imaging Mass Cytometry (IMC) data, your will also need to install SpectreMAP.

Install SpectreMAP

SpectreMAP tutorial

To get started with spatial analysis in R, you can check out our SpectreMAP tutorial.

SpectreMAP tutorial

Once you have completed the introductory SpectreMAP tutorial, you can check out our cell segmentation and spatial analyis workflows.