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Changelog

Source: NEWS.md

Spectre 1.3.0

  • Added utils.R to keep internal reusable functions.
  • Refactored run.flowsom:
    • Added verbose parameter to optionally print progress messages.
    • Overwrites clust.name and meta.clust.name columns in input data.table if they already exist.
    • Tidied up and simplified code.
  • Updated run.umap to overwrite umap.x.name and umap.y.name columns in input data.table if they already exist.
  • Updated do.asinh:
    • Overwrite columns in input data.table if they already exist.
    • Added support to specify a list of cofactors, so different values can be assigned to different markers.
  • Refactored make.colour.plot:
    • Move some code out to internal functions for modularity.
    • Rewrote and simplified code.
    • Added more colour scheme options to support all options in viridis and RColorBrewer and jet.
    • Updated documentation.
    • Fixed issue #197 by using geom_label_repel to draw centroid labels.
    • Added option to do fast plot using scattermore.
  • Added deprecated message for fast.colour.plot.
  • Fixed package.check for issue #186.
  • Refactored read.files and remove any setwd() for issue #162.
  • Add add.label to multi.plot for issue #202.
  • Added a NEWS.md file to track changes to the package.
  • Added testthat unittests.