package.load - a function to load (library) all required packages.

This function allows you to load all of the common use packages dependencies for Spectre. See https://sydneycytometry.org.au/spectre for usage instructions and vignettes.

Usage

package.load(type = "general")

Arguments

type

DEFAULT = "general". If "general", then loads packages required for general Spectre usage. If "spatial", then loads additional packages required for spatial analysis. If "ML", then loads additional packages required for machine-learing functionality.

Value

loads all the common use package libraries.

References

https://sydneycytometry.org.au/spectre

Author

Thomas M Ashhurst, thomas.ashhurst@sydney.edu.au

Examples

package.load()
#> Loading required package: dendsort
#> Loading required package: gtools
#> 
#> Attaching package: ‘gtools’
#> The following object is masked from ‘package:igraph’:
#> 
#>     permute
#> Loading required package: irlba
#> Loading required package: Matrix
#> 
#> Attaching package: ‘Matrix’
#> The following objects are masked from ‘package:tidyr’:
#> 
#>     expand, pack, unpack
#> The following object is masked from ‘package:flowCore’:
#> 
#>     %&%
#> Loading required package: parallel
#> Loading required package: patchwork
#> 
#> Attaching package: ‘patchwork’
#> The following object is masked from ‘package:raster’:
#> 
#>     area
#> Loading required package: rsvd
#> Loading required package: uwot
#> 
#> Attaching package: ‘uwot’
#> The following object is masked from ‘package:umap’:
#> 
#>     umap
#> Loading required package: viridis
#> Loading required package: viridisLite
#> 
#> Attaching package: ‘viridis’
#> The following object is masked from ‘package:scales’:
#> 
#>     viridis_pal