run.spatial.analysis
Usage
run.spatial.analysis(
dat,
sample.col,
pop.col,
annot.cols = NULL,
region.col = NULL,
area.table = NULL,
adj.dist = 20,
x.col = "x",
y.col = "y",
distribution = TRUE,
composition = TRUE,
counts = TRUE,
counts.per.area = TRUE,
distance = TRUE,
adjacency = TRUE,
func = "mean"
)Arguments
- dat
NO DEFAULT. Data.table
- sample.col
NO DEFAULT. Column that denotes 'samples'
- pop.col
NO DEFAULT. Column that denotes 'samples'
- annot.cols
DEFAULT = NULL. Annotation columns.
- region.col
DEFAULT = NULL. Create a 'total' by default, and add specific ones if requested here
- area.table
DEFAULT = NULL. Calculate 'total' automatically
- adj.dist
DEFAULT = 20
- x.col
DEFAULT = 'x'
- y.col
DEFAULT = 'y'
- distribution
DEFAULT = TRUE
- composition
DEFAULT = TRUE
- counts
DEFAULT = TRUE
- counts.per.area
DEFAULT = TRUE
- distance
DEFAULT = TRUE
- adjacency
DEFAULT = TRUE
- func
DEFAULT = 'mean'